Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2075127..2075272 | Replicon | chromosome |
| Accession | NZ_CP064666 | ||
| Organism | Salmonella sp. SJTUF14154 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2075167..2075270 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2075127..2075272 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IVP16_RS10025 | 2071553..2072251 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| IVP16_RS10030 | 2072275..2072931 | - | 657 | WP_023227121.1 | carbon-nitrogen hydrolase family protein | - |
| IVP16_RS10035 | 2073039..2073269 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| IVP16_RS10040 | 2073407..2073781 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| IVP16_RS10045 | 2073782..2074657 | + | 876 | WP_001579467.1 | copper homeostasis membrane protein CopD | - |
| IVP16_RS10050 | 2074674..2075027 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2075127..2075272 | - | 146 | - | - | Antitoxin |
| - | 2075167..2075270 | + | 104 | - | - | Toxin |
| IVP16_RS10055 | 2075391..2076041 | - | 651 | Protein_1965 | tyrosine-type recombinase/integrase | - |
| IVP16_RS10060 | 2076296..2077281 | + | 986 | Protein_1966 | DUF1353 domain-containing protein | - |
| IVP16_RS10065 | 2077330..2077439 | + | 110 | Protein_1967 | tail fiber assembly protein | - |
| IVP16_RS10070 | 2077530..2077715 | - | 186 | WP_071787785.1 | hypothetical protein | - |
| IVP16_RS10075 | 2078151..2078921 | - | 771 | WP_000758583.1 | transporter substrate-binding domain-containing protein | - |
| IVP16_RS10080 | 2079402..2079539 | + | 138 | Protein_1970 | helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2053259..2077381 | 24122 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181332 NZ_CP064666:2075167-2075270 [Salmonella sp. SJTUF14154]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT181332 NZ_CP064666:c2075272-2075127 [Salmonella sp. SJTUF14154]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
