Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2102708..2102853 | Replicon | chromosome |
| Accession | NZ_CP064661 | ||
| Organism | Salmonella sp. SJTUF14178 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2102748..2102851 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2102708..2102853 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IVP18_RS10170 | 2099134..2099832 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| IVP18_RS10175 | 2099856..2100512 | - | 657 | WP_023227121.1 | carbon-nitrogen hydrolase family protein | - |
| IVP18_RS10180 | 2100620..2100850 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| IVP18_RS10185 | 2100988..2101362 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| IVP18_RS10190 | 2101363..2102238 | + | 876 | WP_001579467.1 | copper homeostasis membrane protein CopD | - |
| IVP18_RS10195 | 2102255..2102608 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2102708..2102853 | - | 146 | - | - | Antitoxin |
| - | 2102748..2102851 | + | 104 | - | - | Toxin |
| IVP18_RS10200 | 2102972..2103622 | - | 651 | Protein_1993 | tyrosine-type recombinase/integrase | - |
| IVP18_RS10205 | 2103877..2104862 | + | 986 | Protein_1994 | DUF1353 domain-containing protein | - |
| IVP18_RS10210 | 2104911..2105020 | + | 110 | Protein_1995 | tail fiber assembly protein | - |
| IVP18_RS10215 | 2105111..2105296 | - | 186 | WP_071787785.1 | hypothetical protein | - |
| IVP18_RS10220 | 2105732..2106502 | - | 771 | WP_000758583.1 | transporter substrate-binding domain-containing protein | - |
| IVP18_RS10225 | 2106983..2107120 | + | 138 | Protein_1998 | helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2097048..2104962 | 7914 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181293 NZ_CP064661:2102748-2102851 [Salmonella sp. SJTUF14178]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT181293 NZ_CP064661:c2102853-2102708 [Salmonella sp. SJTUF14178]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
