Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2737958..2738157 | Replicon | chromosome |
| Accession | NZ_CP064656 | ||
| Organism | Enterobacter hormaechei strain 3804 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2737961..2738064 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2737958..2738157 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IT786_RS13230 | 2734216..2735664 | + | 1449 | WP_195206357.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IT786_RS13235 | 2735771..2736010 | + | 240 | WP_003859885.1 | YebV family protein | - |
| IT786_RS13240 | 2736045..2736689 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| IT786_RS13245 | 2736857..2737837 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| IT786_RS13250 | 2737883..2738080 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2737958..2738157 | + | 200 | - | - | Antitoxin |
| - | 2737961..2738064 | - | 104 | - | - | Toxin |
| IT786_RS13255 | 2738206..2738544 | - | 339 | WP_003859787.1 | YebY family protein | - |
| IT786_RS13260 | 2738561..2739430 | - | 870 | WP_003859786.1 | copper homeostasis membrane protein CopD | - |
| IT786_RS13265 | 2739432..2739803 | - | 372 | WP_003859785.1 | CopC domain-containing protein YobA | - |
| IT786_RS13270 | 2739941..2740171 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| IT786_RS13275 | 2740283..2740933 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| IT786_RS13280 | 2740958..2741620 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181275 NZ_CP064656:c2738064-2737961 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT181275 NZ_CP064656:2737958-2738157 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
