Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | TscAT/- |
| Location | 2492702..2493237 | Replicon | chromosome |
| Accession | NZ_CP064389 | ||
| Organism | Staphylococcus aureus strain PartE-Saureus-RM8376 | ||
Toxin (Protein)
| Gene name | TscT | Uniprot ID | A0A4P7P340 |
| Locus tag | IUJ40_RS12695 | Protein ID | WP_001103945.1 |
| Coordinates | 2492702..2493025 (-) | Length | 108 a.a. |
Antitoxin (Protein)
| Gene name | TscA | Uniprot ID | - |
| Locus tag | IUJ40_RS12700 | Protein ID | WP_001058486.1 |
| Coordinates | 2493028..2493237 (-) | Length | 70 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ40_RS12665 (2487804) | 2487804..2488145 | - | 342 | WP_001190614.1 | hypothetical protein | - |
| IUJ40_RS12670 (2488707) | 2488707..2489348 | - | 642 | WP_140045510.1 | pathogenicity island protein | - |
| IUJ40_RS12675 (2489345) | 2489345..2489629 | - | 285 | WP_000998179.1 | hypothetical protein | - |
| IUJ40_RS12680 (2489631) | 2489631..2489993 | - | 363 | WP_031765322.1 | hypothetical protein | - |
| IUJ40_RS12685 (2490294) | 2490294..2491751 | - | 1458 | WP_031765320.1 | virulence-associated E family protein | - |
| IUJ40_RS12690 (2491768) | 2491768..2492637 | - | 870 | WP_031765319.1 | primase alpha helix C-terminal domain-containing protein | - |
| IUJ40_RS12695 (2492702) | 2492702..2493025 | - | 324 | WP_001103945.1 | DUF1474 family protein | Toxin |
| IUJ40_RS12700 (2493028) | 2493028..2493237 | - | 210 | WP_001058486.1 | hypothetical protein | Antitoxin |
| IUJ40_RS12705 (2493230) | 2493230..2493376 | - | 147 | WP_000784875.1 | hypothetical protein | - |
| IUJ40_RS12710 (2493388) | 2493388..2493660 | - | 273 | WP_001138300.1 | helix-turn-helix domain-containing protein | - |
| IUJ40_RS12715 (2493661) | 2493661..2493873 | - | 213 | WP_001245562.1 | helix-turn-helix transcriptional regulator | - |
| IUJ40_RS12720 (2494045) | 2494045..2494770 | + | 726 | WP_000668215.1 | helix-turn-helix transcriptional regulator | - |
| IUJ40_RS12725 (2495034) | 2495034..2496248 | + | 1215 | WP_140045509.1 | site-specific integrase | - |
| IUJ40_RS12730 (2496361) | 2496361..2497080 | + | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IUJ40_RS12735 (2497312) | 2497312..2497554 | - | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| IUJ40_RS12740 (2497606) | 2497606..2498109 | - | 504 | WP_000934799.1 | single-stranded DNA-binding protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2477252..2498861 | 21609 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 108 a.a. Molecular weight: 12665.26 Da Isoelectric Point: 4.7124
>T181134 WP_001103945.1 NZ_CP064389:c2493025-2492702 [Staphylococcus aureus]
MNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLQVYLKEFDELIQKF
HEIEKASSDVSLATESDDAKNSIKVAE
MNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLQVYLKEFDELIQKF
HEIEKASSDVSLATESDDAKNSIKVAE
Download Length: 324 bp
>T181134 NZ_CP085806:303667-303951 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATGACTTATGAACTGGAATTCGACCCGAGGGCCTTAAAAGAGTGGCATAAGCTGGGCGATACGGTGCAGGCTCAGCTTAA
GAAAAAGTTGGCTGATGTGCTATTGAACCCCAGAATCGACTCTGCCCGTTTAAACGATCTTCCTGACTGCTATAAAATTA
AGCTTAAATCGTCCGGTTATCGCTTGGTGTACCAGGTTCGGGATGACGTTGTGATTGTGTTTGTTGTCGCGGTCGGTAAG
CGAGAACATTCAGCCGTCTATCACGATGCAAACAAACGGCTTTAG
ATGACTTATGAACTGGAATTCGACCCGAGGGCCTTAAAAGAGTGGCATAAGCTGGGCGATACGGTGCAGGCTCAGCTTAA
GAAAAAGTTGGCTGATGTGCTATTGAACCCCAGAATCGACTCTGCCCGTTTAAACGATCTTCCTGACTGCTATAAAATTA
AGCTTAAATCGTCCGGTTATCGCTTGGTGTACCAGGTTCGGGATGACGTTGTGATTGTGTTTGTTGTCGCGGTCGGTAAG
CGAGAACATTCAGCCGTCTATCACGATGCAAACAAACGGCTTTAG
Antitoxin
Download Length: 70 a.a. Molecular weight: 8252.31 Da Isoelectric Point: 4.3718
>AT181134 WP_001058486.1 NZ_CP064389:c2493237-2493028 [Staphylococcus aureus]
MNNEQKEVIEHLVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
MNNEQKEVIEHLVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
Download Length: 210 bp
>AT181134 NZ_CP085806:303435-303677 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATGGCCACGCTGAACGTCCGTCTGGATGACAAACTCAAAAATGAGGCTTATGCCGTGCTGGAAAAACTGAACATTACTCC
AACGGAAGCCGTGCGATTACTGTTCCAGTACGTCGCGGAAACGGGGCGCATGCCAGTGAAAACCGTCACTCTTAGCGACA
GTGAAGATGCATTGATTCAGACAGTTCGGGAGAGGCTGTCTAGTCCGCAAAAGGGAATCAAGGTTAGTCTGGATGACTTA
TGA
ATGGCCACGCTGAACGTCCGTCTGGATGACAAACTCAAAAATGAGGCTTATGCCGTGCTGGAAAAACTGAACATTACTCC
AACGGAAGCCGTGCGATTACTGTTCCAGTACGTCGCGGAAACGGGGCGCATGCCAGTGAAAACCGTCACTCTTAGCGACA
GTGAAGATGCATTGATTCAGACAGTTCGGGAGAGGCTGTCTAGTCCGCAAAAGGGAATCAAGGTTAGTCTGGATGACTTA
TGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|