Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5231017..5231162 | Replicon | chromosome |
| Accession | NZ_CP064368 | ||
| Organism | Klebsiella pneumoniae strain PartO-Kpneumoniae-RM8376 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5231053..5231155 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5231017..5231162 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ50_RS25090 | 5226147..5228207 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| IUJ50_RS25095 | 5228211..5228870 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| IUJ50_RS25100 | 5228949..5229179 | - | 231 | WP_025860700.1 | DNA polymerase III subunit theta | - |
| IUJ50_RS25105 | 5229292..5229666 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IUJ50_RS25110 | 5229670..5230539 | + | 870 | WP_025860697.1 | copper homeostasis membrane protein CopD | - |
| IUJ50_RS25115 | 5230556..5230894 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 5231017..5231162 | - | 146 | - | - | Antitoxin |
| - | 5231053..5231155 | + | 103 | - | - | Toxin |
| IUJ50_RS25120 | 5231530..5231673 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IUJ50_RS25125 | 5231778..5232746 | - | 969 | WP_073980558.1 | VirK/YbjX family protein | - |
| IUJ50_RS25130 | 5232903..5233556 | + | 654 | WP_032443931.1 | protein-serine/threonine phosphatase | - |
| IUJ50_RS25135 | 5233553..5233744 | - | 192 | WP_025860695.1 | YebW family protein | - |
| IUJ50_RS25140 | 5233842..5234081 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IUJ50_RS25145 | 5234197..5235630 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T180956 NZ_CP064368:5231053-5231155 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT180956 NZ_CP064368:c5231162-5231017 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
