Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4202723..4203342 Replicon chromosome
Accession NZ_CP064235
Organism Klebsiella pneumoniae strain JX-CR-hvKP-4

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag IS499_RS20885 Protein ID WP_002892050.1
Coordinates 4203124..4203342 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag IS499_RS20880 Protein ID WP_002892066.1
Coordinates 4202723..4203097 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IS499_RS20870 4197875..4199068 + 1194 WP_002892072.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
IS499_RS20875 4199091..4202237 + 3147 WP_020326861.1 multidrug efflux RND transporter permease subunit -
IS499_RS20880 4202723..4203097 + 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
IS499_RS20885 4203124..4203342 + 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
IS499_RS20890 4203501..4204067 + 567 WP_002892030.1 maltose O-acetyltransferase -
IS499_RS20895 4204039..4204179 - 141 WP_004147370.1 hypothetical protein -
IS499_RS20900 4204200..4204670 + 471 WP_002892026.1 YlaC family protein -
IS499_RS20905 4204645..4206096 - 1452 WP_002892023.1 PLP-dependent aminotransferase family protein -
IS499_RS20910 4206197..4206895 + 699 WP_002892021.1 GNAT family N-acetyltransferase -
IS499_RS20915 4206892..4207032 - 141 WP_002892018.1 type B 50S ribosomal protein L36 -
IS499_RS20920 4207032..4207295 - 264 WP_002892011.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T180647 WP_002892050.1 NZ_CP064235:4203124-4203342 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T180647 NZ_CP085622:2682268-2682375 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT180647 WP_002892066.1 NZ_CP064235:4202723-4203097 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT180647 NZ_CP085622:c2682218-2682155 [Escherichia coli]
TCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References