Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2000327..2000472 | Replicon | chromosome |
| Accession | NZ_CP064217 | ||
| Organism | Klebsiella pneumoniae strain JX-CR-hvKP-8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2000363..2000465 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2000327..2000472 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS494_RS09775 | 1995457..1997517 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IS494_RS09780 | 1997521..1998180 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IS494_RS09785 | 1998259..1998489 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IS494_RS09790 | 1998602..1998976 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IS494_RS09795 | 1998980..1999849 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| IS494_RS09800 | 1999866..2000204 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2000327..2000472 | - | 146 | - | - | Antitoxin |
| - | 2000363..2000465 | + | 103 | - | - | Toxin |
| IS494_RS09805 | 2000840..2000983 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IS494_RS09810 | 2001088..2002056 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IS494_RS09815 | 2002213..2002866 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| IS494_RS09820 | 2002863..2003054 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IS494_RS09825 | 2003152..2003391 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IS494_RS09830 | 2003507..2004940 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T180530 NZ_CP064217:2000363-2000465 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT180530 NZ_CP064217:c2000472-2000327 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
