Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2684789..2684936 | Replicon | chromosome |
| Accession | NZ_CP064180 | ||
| Organism | Citrobacter amalonaticus strain CA71 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2684793..2684896 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2684789..2684936 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISX58_RS12660 | 2681795..2683336 | + | 1542 | WP_072040091.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISX58_RS12665 | 2683451..2683687 | + | 237 | WP_161215572.1 | DUF1480 family protein | - |
| ISX58_RS12670 | 2683789..2683980 | + | 192 | WP_043000391.1 | YebW family protein | - |
| ISX58_RS12675 | 2683981..2684643 | - | 663 | WP_043000390.1 | protein-serine/threonine phosphatase | - |
| - | 2684789..2684936 | + | 148 | - | - | Antitoxin |
| - | 2684793..2684896 | - | 104 | - | - | Toxin |
| ISX58_RS12680 | 2685052..2685390 | - | 339 | WP_043000379.1 | YebY family protein | - |
| ISX58_RS12685 | 2685407..2686279 | - | 873 | WP_044257640.1 | copper homeostasis membrane protein CopD | - |
| ISX58_RS12690 | 2686282..2686656 | - | 375 | WP_044257639.1 | CopC domain-containing protein YobA | - |
| ISX58_RS12695 | 2686794..2687024 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| ISX58_RS12700 | 2687133..2687795 | + | 663 | WP_044257638.1 | carbon-nitrogen hydrolase family protein | - |
| ISX58_RS12705 | 2687819..2688481 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T180429 NZ_CP064180:c2684896-2684793 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT180429 NZ_CP064180:2684789-2684936 [Citrobacter amalonaticus]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
