Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3315206..3315351 | Replicon | chromosome |
| Accession | NZ_CP064174 | ||
| Organism | Klebsiella pneumoniae strain 19110124 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3315213..3315315 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3315206..3315351 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISU39_RS16315 | 3310738..3312171 | + | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISU39_RS16320 | 3312287..3312526 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISU39_RS16325 | 3312624..3312815 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISU39_RS16330 | 3312812..3313465 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| ISU39_RS16335 | 3313622..3314590 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| ISU39_RS16340 | 3314695..3314838 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3315206..3315351 | + | 146 | - | - | Antitoxin |
| - | 3315213..3315315 | - | 103 | - | - | Toxin |
| ISU39_RS16345 | 3315474..3315812 | - | 339 | WP_016529031.1 | YebY family protein | - |
| ISU39_RS16350 | 3315829..3316698 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ISU39_RS16355 | 3316702..3317076 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISU39_RS16360 | 3317189..3317419 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISU39_RS16365 | 3317498..3318157 | + | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| ISU39_RS16370 | 3318161..3320221 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T180411 NZ_CP064174:c3315315-3315213 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT180411 NZ_CP064174:3315206-3315351 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
