Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1942308..1942453 | Replicon | chromosome |
| Accession | NZ_CP064129 | ||
| Organism | Klebsiella pneumoniae strain M911-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1942315..1942417 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1942308..1942453 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOD52_RS09680 | 1937839..1939272 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IOD52_RS09685 | 1939388..1939627 | + | 240 | WP_002911393.1 | YebV family protein | - |
| IOD52_RS09690 | 1939725..1939916 | + | 192 | WP_002911395.1 | YebW family protein | - |
| IOD52_RS09695 | 1939913..1940566 | - | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| IOD52_RS09700 | 1940723..1941691 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IOD52_RS09705 | 1941796..1941939 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1942308..1942453 | + | 146 | - | - | Antitoxin |
| - | 1942315..1942417 | - | 103 | - | - | Toxin |
| IOD52_RS09710 | 1942576..1942914 | - | 339 | WP_002911404.1 | YebY family protein | - |
| IOD52_RS09715 | 1942931..1943800 | - | 870 | WP_023280292.1 | copper homeostasis membrane protein CopD | - |
| IOD52_RS09720 | 1943804..1944178 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IOD52_RS09725 | 1944291..1944521 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IOD52_RS09730 | 1944600..1945259 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IOD52_RS09735 | 1945263..1947323 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T180351 NZ_CP064129:c1942417-1942315 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT180351 NZ_CP064129:1942308-1942453 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
