Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2548153..2548247 Replicon chromosome
Accession NZ_CP064127
Organism Yersinia pestis strain C-830

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2548153..2548246 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2548153..2548247 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ISU64_RS11365 2543680..2544630 + 951 WP_002211090.1 prolyl aminopeptidase -
ISU64_RS11370 2544690..2544920 - 231 WP_002211091.1 DNA polymerase III subunit theta -
ISU64_RS11375 2545321..2545830 + 510 WP_002211092.1 non-heme ferritin -
ISU64_RS11380 2546272..2546658 + 387 WP_002211093.1 CopC domain-containing protein YobA -
ISU64_RS11385 2546661..2547545 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
ISU64_RS11390 2547642..2547983 + 342 WP_002211095.1 YebY family protein -
- 2548153..2548246 + 94 - - Toxin
- 2548153..2548247 - 95 - - Antitoxin
ISU64_RS11395 2548506..2548832 - 327 WP_002211097.1 DUF1493 family protein -
ISU64_RS11400 2548826..2549284 - 459 WP_002211098.1 hypothetical protein -
ISU64_RS11405 2549816..2550976 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
ISU64_RS11410 2550976..2553054 + 2079 WP_011906249.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T180326 NZ_CP064127:2548153-2548246 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT180326 NZ_CP064127:c2548247-2548153 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References