Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 528432..529052 Replicon chromosome
Accession NZ_CP064127
Organism Yersinia pestis strain C-830

Toxin (Protein)


Gene name Hha Uniprot ID Q66DR5
Locus tag ISU64_RS02405 Protein ID WP_002208622.1
Coordinates 528432..528635 (-) Length 68 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID Q66DR4
Locus tag ISU64_RS02410 Protein ID WP_002218472.1
Coordinates 528684..529052 (-) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ISU64_RS02375 523454..523792 + 339 WP_002208627.1 P-II family nitrogen regulator -
ISU64_RS02380 523832..525121 + 1290 WP_002228344.1 ammonium transporter AmtB -
ISU64_RS02385 525381..526241 - 861 WP_002208625.1 acyl-CoA thioesterase II -
ISU64_RS02390 526498..527019 + 522 WP_002208624.1 lipoprotein -
ISU64_RS02395 527155..527544 - 390 WP_002208623.1 MGMT family protein -
ISU64_RS02405 528432..528635 - 204 WP_002208622.1 expression modulating protein YmoA Toxin
ISU64_RS02410 528684..529052 - 369 WP_002218472.1 Hha toxicity modulator TomB Antitoxin
ISU64_RS02415 529211..529564 - 354 WP_002208619.1 hypothetical protein -
ISU64_RS02420 530438..530581 - 144 WP_002208618.1 type B 50S ribosomal protein L36 -
ISU64_RS02425 530597..530857 - 261 WP_002208617.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(8-64)

Antitoxin

Biofilm formation regulator YbaJ

(1-118)


Sequences

Toxin        


Download         Length: 68 a.a.        Molecular weight: 8063.31 Da        Isoelectric Point: 6.4573

>T180324 WP_002208622.1 NZ_CP064127:c528635-528432 [Yersinia pestis]
MTKTDYLMRLRKCTTIDTLERVIEKNKYELSDDELELFYSAADHRLAELTMNKLYDKIPPTVWQHVK

Download         Length: 204 bp

>T180324 NZ_CP085183:c2622712-2622536 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 14215.00 Da        Isoelectric Point: 4.6121

>AT180324 WP_002218472.1 NZ_CP064127:c529052-528684 [Yersinia pestis]
MDEYSPKRHDIAQLKFLCESLYDEGIATLGDSHHGWINDPTSAINLQLNDLIEHIASFVMSFKIKYPDGSQLSELVEEYL
DDTYTLFSSYGINDPELRRWQKTKEHLFRLFSGEYVCTLMKT

Download         Length: 369 bp

>AT180324 NZ_CP085183:c2622490-2622074 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
GCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCATGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2K5S

Antitoxin

Source ID Structure
AlphaFold DB Q66DR4

References