Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2485459..2485553 | Replicon | chromosome |
| Accession | NZ_CP064126 | ||
| Organism | Yersinia pestis strain I-1252 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2485460..2485553 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2485459..2485553 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISU63_RS11175 | 2480652..2482730 | - | 2079 | WP_002211100.1 | flagellar biosynthesis protein FlhA | - |
| ISU63_RS11180 | 2482730..2483890 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
| ISU63_RS11185 | 2484422..2484880 | + | 459 | WP_002211098.1 | hypothetical protein | - |
| ISU63_RS11190 | 2484874..2485200 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 2485459..2485553 | + | 95 | - | - | Antitoxin |
| - | 2485460..2485553 | - | 94 | - | - | Toxin |
| ISU63_RS11195 | 2485723..2486064 | - | 342 | WP_002211095.1 | YebY family protein | - |
| ISU63_RS11200 | 2486161..2487045 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| ISU63_RS11205 | 2487048..2487434 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| ISU63_RS11210 | 2487831..2488340 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| ISU63_RS11215 | 2488741..2488971 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| ISU63_RS11220 | 2489031..2489981 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T180315 NZ_CP064126:c2485553-2485460 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT180315 NZ_CP064126:2485459-2485553 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
