Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2867753..2867847 | Replicon | chromosome |
Accession | NZ_CP064125 | ||
Organism | Yersinia pestis strain M2085 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2867754..2867847 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2867753..2867847 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ISU62_RS12725 | 2862946..2865024 | - | 2079 | WP_002211100.1 | flagellar biosynthesis protein FlhA | - |
ISU62_RS12730 | 2865024..2866184 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
ISU62_RS12735 | 2866716..2867174 | + | 459 | WP_002211098.1 | hypothetical protein | - |
ISU62_RS12740 | 2867168..2867494 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
- | 2867753..2867847 | + | 95 | - | - | Antitoxin |
- | 2867754..2867847 | - | 94 | - | - | Toxin |
ISU62_RS12745 | 2868017..2868358 | - | 342 | WP_002211095.1 | YebY family protein | - |
ISU62_RS12750 | 2868455..2869339 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
ISU62_RS12755 | 2869342..2869728 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
ISU62_RS12760 | 2870152..2870661 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
ISU62_RS12765 | 2871062..2871292 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
ISU62_RS12770 | 2871352..2872302 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T180301 NZ_CP064125:c2867847-2867754 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT180301 NZ_CP064125:2867753-2867847 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA