Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 935609..935703 Replicon chromosome
Accession NZ_CP064124
Organism Yersinia pestis strain M-1974

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 935610..935703 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 935609..935703 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ISU61_RS04285 930802..932880 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
ISU61_RS04290 932880..934040 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
ISU61_RS04295 934572..935030 + 459 WP_002211098.1 hypothetical protein -
ISU61_RS04300 935024..935350 + 327 WP_002211097.1 DUF1493 family protein -
- 935609..935703 + 95 - - Antitoxin
- 935610..935703 - 94 - - Toxin
ISU61_RS04305 935873..936214 - 342 WP_002211095.1 YebY family protein -
ISU61_RS04310 936311..937195 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
ISU61_RS04315 937198..937584 - 387 WP_002211093.1 CopC domain-containing protein YobA -
ISU61_RS04320 937990..938499 - 510 WP_002211092.1 non-heme ferritin -
ISU61_RS04325 938900..939130 + 231 WP_002211091.1 DNA polymerase III subunit theta -
ISU61_RS04330 939190..940140 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T180286 NZ_CP064124:c935703-935610 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT180286 NZ_CP064124:935609-935703 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References