Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1791104..1791198 Replicon chromosome
Accession NZ_CP064122
Organism Yersinia pestis strain M-1770

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1791104..1791197 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1791104..1791198 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ISU59_RS07685 1786676..1787626 + 951 WP_002211090.1 prolyl aminopeptidase -
ISU59_RS07690 1787686..1787916 - 231 WP_002211091.1 DNA polymerase III subunit theta -
ISU59_RS07695 1788317..1788826 + 510 WP_002211092.1 non-heme ferritin -
ISU59_RS07700 1789223..1789609 + 387 WP_002211093.1 CopC domain-containing protein YobA -
ISU59_RS07705 1789612..1790496 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
ISU59_RS07710 1790593..1790934 + 342 WP_002211095.1 YebY family protein -
- 1791104..1791197 + 94 - - Toxin
- 1791104..1791198 - 95 - - Antitoxin
ISU59_RS07715 1791457..1791783 - 327 WP_002211097.1 DUF1493 family protein -
ISU59_RS07720 1791777..1792235 - 459 WP_002211098.1 hypothetical protein -
ISU59_RS07725 1792767..1793927 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
ISU59_RS07730 1793927..1796005 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T180261 NZ_CP064122:1791104-1791197 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT180261 NZ_CP064122:c1791198-1791104 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References