Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2149469..2149563 Replicon chromosome
Accession NZ_CP064119
Organism Yersinia pestis strain C-792

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2149469..2149562 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2149469..2149563 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ISU56_RS09475 2145041..2145991 + 951 WP_002211090.1 prolyl aminopeptidase -
ISU56_RS09480 2146051..2146281 - 231 WP_002211091.1 DNA polymerase III subunit theta -
ISU56_RS09485 2146682..2147191 + 510 WP_002211092.1 non-heme ferritin -
ISU56_RS09490 2147588..2147974 + 387 WP_002211093.1 CopC domain-containing protein YobA -
ISU56_RS09495 2147977..2148861 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
ISU56_RS09500 2148958..2149299 + 342 WP_002211095.1 YebY family protein -
- 2149469..2149562 + 94 - - Toxin
- 2149469..2149563 - 95 - - Antitoxin
ISU56_RS09505 2149822..2150148 - 327 WP_002211097.1 DUF1493 family protein -
ISU56_RS09510 2150142..2150600 - 459 WP_002211098.1 hypothetical protein -
ISU56_RS09515 2151132..2152292 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
ISU56_RS09520 2152292..2154370 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T180222 NZ_CP064119:2149469-2149562 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT180222 NZ_CP064119:c2149563-2149469 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References