Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1734307..1734401 Replicon chromosome
Accession NZ_CP064117
Organism Yersinia pestis strain C-781

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1734307..1734400 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1734307..1734401 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ISU54_RS07400 1729879..1730829 + 951 WP_002211090.1 prolyl aminopeptidase -
ISU54_RS07405 1730889..1731119 - 231 WP_002211091.1 DNA polymerase III subunit theta -
ISU54_RS07410 1731520..1732029 + 510 WP_002211092.1 non-heme ferritin -
ISU54_RS07415 1732426..1732812 + 387 WP_002211093.1 CopC domain-containing protein YobA -
ISU54_RS07420 1732815..1733699 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
ISU54_RS07425 1733796..1734137 + 342 WP_002211095.1 YebY family protein -
- 1734307..1734400 + 94 - - Toxin
- 1734307..1734401 - 95 - - Antitoxin
ISU54_RS07430 1734660..1734986 - 327 WP_002211097.1 DUF1493 family protein -
ISU54_RS07435 1734980..1735438 - 459 WP_002211098.1 hypothetical protein -
ISU54_RS07440 1735970..1737130 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
ISU54_RS07445 1737130..1739208 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T180196 NZ_CP064117:1734307-1734400 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT180196 NZ_CP064117:c1734401-1734307 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References