Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2699336..2699535 | Replicon | chromosome |
| Accession | NZ_CP064113 | ||
| Organism | Enterobacter hormaechei strain IR5283 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2699339..2699442 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2699336..2699535 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISU86_RS12960 | 2695594..2697042 | + | 1449 | WP_195206357.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISU86_RS12965 | 2697149..2697388 | + | 240 | WP_003859885.1 | YebV family protein | - |
| ISU86_RS12970 | 2697423..2698067 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| ISU86_RS12975 | 2698235..2699215 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| ISU86_RS12980 | 2699261..2699458 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2699336..2699535 | + | 200 | - | - | Antitoxin |
| - | 2699339..2699442 | - | 104 | - | - | Toxin |
| ISU86_RS12985 | 2699584..2699922 | - | 339 | WP_003859787.1 | YebY family protein | - |
| ISU86_RS12990 | 2699939..2700808 | - | 870 | WP_003859786.1 | copper homeostasis membrane protein CopD | - |
| ISU86_RS12995 | 2700810..2701181 | - | 372 | WP_003859785.1 | CopC domain-containing protein YobA | - |
| ISU86_RS13000 | 2701319..2701549 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| ISU86_RS13005 | 2701661..2702311 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| ISU86_RS13010 | 2702336..2702998 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T180181 NZ_CP064113:c2699442-2699339 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT180181 NZ_CP064113:2699336-2699535 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
