Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2593095..2593240 | Replicon | chromosome |
| Accession | NZ_CP064108 | ||
| Organism | Klebsiella oxytoca strain IR5392 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2593130..2593233 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2593095..2593240 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISU85_RS12280 | 2588199..2590259 | + | 2061 | WP_032726355.1 | oligopeptidase B | - |
| ISU85_RS12285 | 2590266..2590925 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| ISU85_RS12290 | 2591004..2591234 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| ISU85_RS12295 | 2591370..2591744 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| ISU85_RS12300 | 2591749..2592618 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| ISU85_RS12305 | 2592635..2592973 | + | 339 | WP_023321222.1 | YebY family protein | - |
| - | 2593095..2593240 | - | 146 | - | - | Antitoxin |
| - | 2593130..2593233 | + | 104 | - | - | Toxin |
| ISU85_RS12310 | 2593360..2594319 | - | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| ISU85_RS12315 | 2594331..2596664 | - | 2334 | WP_023329845.1 | fimbrial biogenesis outer membrane usher protein | - |
| ISU85_RS12320 | 2596667..2597431 | - | 765 | WP_004113760.1 | molecular chaperone | - |
| ISU85_RS12325 | 2597449..2597967 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T180162 NZ_CP064108:2593130-2593233 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT180162 NZ_CP064108:c2593240-2593095 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
