Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 1498268..1498827 | Replicon | chromosome |
| Accession | NZ_CP064041 | ||
| Organism | Vibrio parahaemolyticus strain XMO116 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | H9J98_RS07180 | Protein ID | WP_053312146.1 |
| Coordinates | 1498268..1498546 (-) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | H9J98_RS07185 | Protein ID | WP_053312147.1 |
| Coordinates | 1498543..1498827 (-) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9J98_RS07135 (H9J98_07065) | 1493447..1494130 | + | 684 | WP_069529237.1 | hypothetical protein | - |
| H9J98_RS07140 (H9J98_07070) | 1494158..1494250 | + | 93 | WP_079751132.1 | DUF3265 domain-containing protein | - |
| H9J98_RS07145 (H9J98_07075) | 1494773..1494862 | + | 90 | WP_071881309.1 | DUF3265 domain-containing protein | - |
| H9J98_RS07150 (H9J98_07080) | 1494890..1495444 | + | 555 | WP_053319305.1 | YkgJ family cysteine cluster protein | - |
| H9J98_RS07155 (H9J98_07085) | 1495605..1496039 | + | 435 | WP_100088283.1 | GNAT family N-acetyltransferase | - |
| H9J98_RS07160 (H9J98_07090) | 1496166..1496510 | + | 345 | WP_176296810.1 | hypothetical protein | - |
| H9J98_RS07165 (H9J98_07095) | 1496513..1496962 | + | 450 | WP_176296809.1 | hypothetical protein | - |
| H9J98_RS07170 (H9J98_07100) | 1496977..1497069 | + | 93 | WP_222133812.1 | DUF3265 domain-containing protein | - |
| H9J98_RS07175 (H9J98_07105) | 1497684..1498130 | + | 447 | WP_031817701.1 | GNAT family N-acetyltransferase | - |
| H9J98_RS07180 (H9J98_07110) | 1498268..1498546 | - | 279 | WP_053312146.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| H9J98_RS07185 (H9J98_07115) | 1498543..1498827 | - | 285 | WP_053312147.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| H9J98_RS07190 (H9J98_07120) | 1499029..1499850 | + | 822 | WP_020840798.1 | DUF2002 family protein | - |
| H9J98_RS07195 (H9J98_07125) | 1499970..1500446 | + | 477 | WP_029836910.1 | GNAT family N-acetyltransferase | - |
| H9J98_RS07200 (H9J98_07130) | 1500464..1500553 | + | 90 | WP_079855467.1 | DUF3265 domain-containing protein | - |
| H9J98_RS07205 (H9J98_07135) | 1500517..1500945 | + | 429 | WP_248339879.1 | NAD(P)H-dependent oxidoreductase | - |
| H9J98_RS07210 (H9J98_07140) | 1501173..1502714 | + | 1542 | WP_248339881.1 | IS21 family transposase | - |
| H9J98_RS07215 (H9J98_07145) | 1502730..1503482 | + | 753 | WP_248339883.1 | IS21-like element helper ATPase IstB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | vpadF / VP1611 / vopD / vopB / vcrH / vcrV / vcrG / vcrR / vcrD / vscY / vscX / sycN/vcr2 / tyeA/vcr1 / vopN / vscN / vscO / vscP / vscQ / vscR / vscS / vscT / vscU / vopQ / vecA / vopR / vopS / vscL / vscK / vscJ / vscI / vscH / vscG / vscF / vscD / vscC / vscB / exsD / exsA / virG / vxsC | 1313903..1877080 | 563177 | |
| - | inside | Integron | - | - | 1465102..1500945 | 35843 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10880.55 Da Isoelectric Point: 4.3324
>T179975 WP_053312146.1 NZ_CP064041:c1498546-1498268 [Vibrio parahaemolyticus]
MILWEEESLNDREKIFEFLYDFNPDAADKTDEIIETKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVDGSVIRIM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPDAADKTDEIIETKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVDGSVIRIM
RVLHQKQKFPTD
Download Length: 279 bp
>T179975 NZ_CP084921:c3224504-3224322 [Acinetobacter pittii]
GTGAAAAGTCTGGATTTAGTCAAAATGATTGAAGCAGACGGTTGGTACTTAGTTAGGGTTAAAGGAAGTCATCATCACTT
CAAACATCCAACTAAAGGGGGCTTAGTTACTATCCCTCATCCTAAAAAAGATTTACCAAACGGAACTGTTAAAAGCATTT
TGAAGCAAGCGGGTCTAAATTGA
GTGAAAAGTCTGGATTTAGTCAAAATGATTGAAGCAGACGGTTGGTACTTAGTTAGGGTTAAAGGAAGTCATCATCACTT
CAAACATCCAACTAAAGGGGGCTTAGTTACTATCCCTCATCCTAAAAAAGATTTACCAAACGGAACTGTTAAAAGCATTT
TGAAGCAAGCGGGTCTAAATTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10913.19 Da Isoelectric Point: 8.0515
>AT179975 WP_053312147.1 NZ_CP064041:c1498827-1498543 [Vibrio parahaemolyticus]
MDTRIQFRVDDEVKRLAQQMAESQGRTLSDACRELTEQMAEQQRKALSHDNWLTEQVNLAFEKFDSGKASFVDHDSAKAR
MAERKAKIRNRGQQ
MDTRIQFRVDDEVKRLAQQMAESQGRTLSDACRELTEQMAEQQRKALSHDNWLTEQVNLAFEKFDSGKASFVDHDSAKAR
MAERKAKIRNRGQQ
Download Length: 285 bp
>AT179975 NZ_CP084921:c3224230-3223826 [Acinetobacter pittii]
ATGTTATATCCAATTGCAATTGAACGAGGATCAGATACCGAAGCATTTGGTGTCACTGTTCCTGATATTCCAGGTTGTTT
TAGTGCTGGCGACACATTAGAGGAAGCTATCGAGAACGTAAAAGAGGCTATTTCTGGTCATTTAGAAATCCTAGCTGAAG
ATGGTGAGGAAATTCCTTTAGCATCTGAAGTAGGTAAGTTTCTAGATGATACCGACTATAAAGGAATGATCTGGGCAGTT
ACTGAAGTTGATGTTAGTCGTTATTTAGGTAAGCCAGAAAAAATCAATGTTACTTTGCCAAGCCGATTAATTCGGAAGAT
TGATGATAATGTTGGTAAGGATAAAAGATTTAAAACCCGATCTGCATTTTTGGCCGCTGGTGCTGAAAAGCTACTACATG
CTTAA
ATGTTATATCCAATTGCAATTGAACGAGGATCAGATACCGAAGCATTTGGTGTCACTGTTCCTGATATTCCAGGTTGTTT
TAGTGCTGGCGACACATTAGAGGAAGCTATCGAGAACGTAAAAGAGGCTATTTCTGGTCATTTAGAAATCCTAGCTGAAG
ATGGTGAGGAAATTCCTTTAGCATCTGAAGTAGGTAAGTTTCTAGATGATACCGACTATAAAGGAATGATCTGGGCAGTT
ACTGAAGTTGATGTTAGTCGTTATTTAGGTAAGCCAGAAAAAATCAATGTTACTTTGCCAAGCCGATTAATTCGGAAGAT
TGATGATAATGTTGGTAAGGATAAAAGATTTAAAACCCGATCTGCATTTTTGGCCGCTGGTGCTGAAAAGCTACTACATG
CTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|