Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-YefM |
| Location | 1395452..1395997 | Replicon | chromosome |
| Accession | NZ_CP064033 | ||
| Organism | Vibrio parahaemolyticus strain DLM1805 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | H9K48_RS06930 | Protein ID | WP_025793277.1 |
| Coordinates | 1395452..1395748 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | Q7MKD6 |
| Locus tag | H9K48_RS06935 | Protein ID | WP_000557294.1 |
| Coordinates | 1395755..1395997 (-) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9K48_RS06880 (H9K48_06855) | 1390741..1390869 | + | 129 | WP_077672984.1 | DUF3265 domain-containing protein | - |
| H9K48_RS06885 (H9K48_06860) | 1390898..1391554 | + | 657 | WP_025793281.1 | hypothetical protein | - |
| H9K48_RS06890 (H9K48_06865) | 1391694..1392497 | + | 804 | WP_025793280.1 | hypothetical protein | - |
| H9K48_RS06895 (H9K48_06870) | 1392487..1392579 | + | 93 | WP_079725826.1 | DUF3265 domain-containing protein | - |
| H9K48_RS06900 (H9K48_06875) | 1392606..1393238 | + | 633 | WP_086583720.1 | hypothetical protein | - |
| H9K48_RS06905 (H9K48_06880) | 1393385..1393687 | + | 303 | WP_025537048.1 | hypothetical protein | - |
| H9K48_RS06910 (H9K48_06885) | 1393627..1393794 | + | 168 | WP_001883086.1 | DUF3265 domain-containing protein | - |
| H9K48_RS06915 (H9K48_06890) | 1393825..1394346 | + | 522 | WP_015296898.1 | GNAT family N-acetyltransferase | - |
| H9K48_RS06920 (H9K48_06895) | 1394467..1394814 | + | 348 | WP_025793278.1 | cupin domain-containing protein | - |
| H9K48_RS06925 | 1395255..1395335 | + | 81 | Protein_1284 | DUF3265 domain-containing protein | - |
| H9K48_RS06930 (H9K48_06900) | 1395452..1395748 | - | 297 | WP_025793277.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| H9K48_RS06935 (H9K48_06905) | 1395755..1395997 | - | 243 | WP_000557294.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| H9K48_RS06940 (H9K48_06910) | 1396287..1396595 | + | 309 | WP_005464425.1 | transposase | - |
| H9K48_RS06945 (H9K48_06915) | 1396550..1397428 | + | 879 | WP_140142865.1 | IS3 family transposase | - |
| H9K48_RS06950 (H9K48_06925) | 1397903..1398793 | + | 891 | WP_005485669.1 | hypothetical protein | - |
| H9K48_RS06955 (H9K48_06930) | 1398874..1399284 | + | 411 | WP_086583722.1 | hypothetical protein | - |
| H9K48_RS06960 (H9K48_06935) | 1399463..1399897 | + | 435 | Protein_1291 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | vpadF | 1355097..1423833 | 68736 | |
| - | flank | IS/Tn | - | - | 1400211..1400597 | 386 | |
| - | inside | Integron | - | - | 1308270..1399759 | 91489 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11249.00 Da Isoelectric Point: 9.8450
>T179968 WP_025793277.1 NZ_CP064033:c1395748-1395452 [Vibrio parahaemolyticus]
MQKNKYKLSKLAQAHLRKIKSYTVNNFSEMQWRSYKDTLLTGFQMLADNPAVGRSCDEIYPSGFYFPVGKHTAYFTKEDG
FILVVAILGQSLLPQNHL
MQKNKYKLSKLAQAHLRKIKSYTVNNFSEMQWRSYKDTLLTGFQMLADNPAVGRSCDEIYPSGFYFPVGKHTAYFTKEDG
FILVVAILGQSLLPQNHL
Download Length: 297 bp
>T179968 NZ_CP084914:c3350482-3350234 [Leptospira borgpetersenii]
ATGAAGGCTTTAGTTGTAAAAATAGGTAATTCAAAAGGAATTCGGATTCCCAAAGCGGTTTTAGAAGAATGCCATATTGA
AGAAGAAGTAGATTTACTAATCGATAATAATAAATTAATTATTGTGCCTCTAAAATCGAAACCAAGAGAAGGGTGGGAAA
AACAATTTAAATCAATGTCATCTAATAAAGATGATAAATTGCTTGTTCCTGATTCAATAGATTTATCGGATAAGGATTGG
GAATGGTGA
ATGAAGGCTTTAGTTGTAAAAATAGGTAATTCAAAAGGAATTCGGATTCCCAAAGCGGTTTTAGAAGAATGCCATATTGA
AGAAGAAGTAGATTTACTAATCGATAATAATAAATTAATTATTGTGCCTCTAAAATCGAAACCAAGAGAAGGGTGGGAAA
AACAATTTAAATCAATGTCATCTAATAAAGATGATAAATTGCTTGTTCCTGATTCAATAGATTTATCGGATAAGGATTGG
GAATGGTGA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8973.13 Da Isoelectric Point: 4.6135
>AT179968 WP_000557294.1 NZ_CP064033:c1395997-1395755 [Vibrio parahaemolyticus]
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDAVVVMSIKDYEELEAMKADYLRHCFESAKQDLAQGDVVDGEDFLNAL
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDAVVVMSIKDYEELEAMKADYLRHCFESAKQDLAQGDVVDGEDFLNAL
Download Length: 243 bp
>AT179968 NZ_CP084914:c3350240-3349917 [Leptospira borgpetersenii]
ATGGTGATTTCTCAATACGAAGTATATTTGATAAATTTGGATCCAACGGTCGGACATGAGATTAAAAAATCAAGACCTTG
CGTAATAATCTCACCTAATGAAATGAATAAAACTATCGGAACAATTATTATTACACCAATGACTACCAAATCTCGGTCAT
ATCCAACAAGAGTCGAATTAACATTTCAAGGAAAGAAAGGCTGGATTGTGTTAGATCAAATTCGAACTGTAGATAAAATA
CGTCTGATAAAAAAGTTAGGAAAAATAGATCCCAAAACAGTTAATAAAATGAAACTGATTATAAAGGAAATGTTGGTTGA
TTAA
ATGGTGATTTCTCAATACGAAGTATATTTGATAAATTTGGATCCAACGGTCGGACATGAGATTAAAAAATCAAGACCTTG
CGTAATAATCTCACCTAATGAAATGAATAAAACTATCGGAACAATTATTATTACACCAATGACTACCAAATCTCGGTCAT
ATCCAACAAGAGTCGAATTAACATTTCAAGGAAAGAAAGGCTGGATTGTGTTAGATCAAATTCGAACTGTAGATAAAATA
CGTCTGATAAAAAAGTTAGGAAAAATAGATCCCAAAACAGTTAATAAAATGAAACTGATTATAAAGGAAATGTTGGTTGA
TTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|