Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4168417..4168562 | Replicon | chromosome |
| Accession | NZ_CP063992 | ||
| Organism | Klebsiella pneumoniae strain M164-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4168424..4168526 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4168417..4168562 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS86_RS20400 | 4163948..4165381 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HXS86_RS20405 | 4165497..4165736 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HXS86_RS20410 | 4165834..4166025 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HXS86_RS20415 | 4166022..4166675 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| HXS86_RS20420 | 4166832..4167800 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| HXS86_RS20425 | 4167905..4168048 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 4168417..4168562 | + | 146 | - | - | Antitoxin |
| - | 4168424..4168526 | - | 103 | - | - | Toxin |
| HXS86_RS20430 | 4168685..4169023 | - | 339 | WP_002911404.1 | YebY family protein | - |
| HXS86_RS20435 | 4169040..4169909 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| HXS86_RS20440 | 4169913..4170287 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| HXS86_RS20445 | 4170400..4170630 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HXS86_RS20450 | 4170709..4171368 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HXS86_RS20455 | 4171372..4173432 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179926 NZ_CP063992:c4168526-4168424 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179926 NZ_CP063992:4168417-4168562 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
