Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2220233..2220501 | Replicon | chromosome |
| Accession | NZ_CP063983 | ||
| Organism | Escherichia coli strain 25DN | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2220361..2220463 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2220233..2220501 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IR210_RS10300 | 2216785..2217447 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IR210_RS10305 | 2217471..2218127 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| IR210_RS10310 | 2218230..2218460 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IR210_RS10315 | 2218599..2218973 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IR210_RS10320 | 2218977..2219849 | + | 873 | WP_194446354.1 | copper homeostasis membrane protein CopD | - |
| IR210_RS10325 | 2219862..2220203 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2220233..2220501 | - | 269 | - | - | Antitoxin |
| - | 2220361..2220463 | + | 103 | - | - | Toxin |
| IR210_RS10330 | 2220598..2221254 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| IR210_RS10335 | 2221255..2221446 | - | 192 | WP_001317886.1 | YebW family protein | - |
| IR210_RS10340 | 2221551..2221787 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IR210_RS10345 | 2221905..2223344 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179894 NZ_CP063983:2220361-2220463 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT179894 NZ_CP063983:c2220501-2220233 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
