Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2962874..2963018 | Replicon | chromosome |
| Accession | NZ_CP063954 | ||
| Organism | Klebsiella variicola strain S129-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2962880..2962982 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2962874..2963018 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOD50_RS14220 | 2958397..2959830 | + | 1434 | WP_194394513.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IOD50_RS14225 | 2959946..2960185 | + | 240 | WP_002911393.1 | YebV family protein | - |
| IOD50_RS14230 | 2960283..2960474 | + | 192 | WP_002911395.1 | YebW family protein | - |
| IOD50_RS14235 | 2960471..2961124 | - | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| IOD50_RS14240 | 2961280..2962248 | + | 969 | WP_194394512.1 | VirK/YbjX family protein | - |
| IOD50_RS14245 | 2962352..2962495 | + | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| - | 2962874..2963018 | + | 145 | - | - | Antitoxin |
| - | 2962880..2962982 | - | 103 | - | - | Toxin |
| IOD50_RS14250 | 2963140..2963478 | - | 339 | WP_008804271.1 | YebY family protein | - |
| IOD50_RS14255 | 2963495..2964364 | - | 870 | WP_194394511.1 | copper homeostasis membrane protein CopD | - |
| IOD50_RS14260 | 2964368..2964742 | - | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| IOD50_RS14265 | 2964856..2965086 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| IOD50_RS14270 | 2965165..2965824 | + | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| IOD50_RS14275 | 2965828..2967888 | - | 2061 | WP_012541258.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179831 NZ_CP063954:c2962982-2962880 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179831 NZ_CP063954:2962874-2963018 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
