Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3382134..3382278 | Replicon | chromosome |
| Accession | NZ_CP063953 | ||
| Organism | Klebsiella variicola strain S131-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3382170..3382272 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3382134..3382278 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISD12_RS16005 | 3377264..3379324 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| ISD12_RS16010 | 3379328..3379987 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| ISD12_RS16015 | 3380066..3380296 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISD12_RS16020 | 3380410..3380784 | + | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| ISD12_RS16025 | 3380788..3381657 | + | 870 | WP_194394511.1 | copper homeostasis membrane protein CopD | - |
| ISD12_RS16030 | 3381674..3382012 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 3382134..3382278 | - | 145 | - | - | Antitoxin |
| - | 3382170..3382272 | + | 103 | - | - | Toxin |
| ISD12_RS16035 | 3382657..3382800 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| ISD12_RS16040 | 3382904..3383872 | - | 969 | WP_194394512.1 | VirK/YbjX family protein | - |
| ISD12_RS16045 | 3384028..3384681 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| ISD12_RS16050 | 3384678..3384869 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISD12_RS16055 | 3384967..3385206 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISD12_RS16060 | 3385322..3386755 | - | 1434 | WP_194394513.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179819 NZ_CP063953:3382170-3382272 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179819 NZ_CP063953:c3382278-3382134 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
