Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 952400..952545 | Replicon | chromosome |
| Accession | NZ_CP063945 | ||
| Organism | Klebsiella pneumoniae strain S166-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 952436..952538 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 952400..952545 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOD25_RS04500 | 947530..949590 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IOD25_RS04505 | 949594..950253 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IOD25_RS04510 | 950332..950562 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IOD25_RS04515 | 950675..951049 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IOD25_RS04520 | 951053..951922 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| IOD25_RS04525 | 951939..952277 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 952400..952545 | - | 146 | - | - | Antitoxin |
| - | 952436..952538 | + | 103 | - | - | Toxin |
| IOD25_RS04530 | 952913..953056 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IOD25_RS04535 | 953161..954129 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IOD25_RS04540 | 954286..954939 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| IOD25_RS04545 | 954936..955127 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IOD25_RS04550 | 955225..955464 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IOD25_RS04555 | 955580..957013 | - | 1434 | WP_194433240.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179787 NZ_CP063945:952436-952538 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179787 NZ_CP063945:c952545-952400 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
