Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1443581..1443726 | Replicon | chromosome |
| Accession | NZ_CP063943 | ||
| Organism | Klebsiella pneumoniae strain BS329-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1443617..1443719 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1443581..1443726 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA55_RS06915 | 1438711..1440771 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| ISA55_RS06920 | 1440775..1441434 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISA55_RS06925 | 1441513..1441743 | - | 231 | WP_025860700.1 | DNA polymerase III subunit theta | - |
| ISA55_RS06930 | 1441856..1442230 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISA55_RS06935 | 1442234..1443103 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ISA55_RS06940 | 1443120..1443458 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1443581..1443726 | - | 146 | - | - | Antitoxin |
| - | 1443617..1443719 | + | 103 | - | - | Toxin |
| ISA55_RS06945 | 1444094..1444237 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| ISA55_RS06950 | 1444342..1445310 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| ISA55_RS06955 | 1445467..1446120 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| ISA55_RS06960 | 1446117..1446308 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISA55_RS06965 | 1446406..1446645 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISA55_RS06970 | 1446761..1448194 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179769 NZ_CP063943:1443617-1443719 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179769 NZ_CP063943:c1443726-1443581 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
