Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3774087..3774234 | Replicon | chromosome |
| Accession | NZ_CP063942 | ||
| Organism | Klebsiella quasipneumoniae strain BS418 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3774091..3774193 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3774087..3774234 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA61_RS18100 | 3769603..3771036 | + | 1434 | WP_032431083.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA61_RS18105 | 3771153..3771392 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA61_RS18110 | 3771490..3771681 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA61_RS18115 | 3771678..3772331 | - | 654 | WP_023318613.1 | protein-serine/threonine phosphatase | - |
| ISA61_RS18120 | 3772488..3773456 | + | 969 | WP_117434979.1 | VirK/YbjX family protein | - |
| ISA61_RS18125 | 3773560..3773703 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 3774087..3774234 | + | 148 | - | - | Antitoxin |
| - | 3774091..3774193 | - | 103 | - | - | Toxin |
| ISA61_RS18130 | 3774352..3774690 | - | 339 | WP_194418693.1 | YebY family protein | - |
| ISA61_RS18135 | 3774707..3775576 | - | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| ISA61_RS18140 | 3775580..3775954 | - | 375 | WP_194418695.1 | CopC domain-containing protein YobA | - |
| ISA61_RS18145 | 3776067..3776297 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA61_RS18150 | 3776376..3777035 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| ISA61_RS18155 | 3777039..3779099 | - | 2061 | WP_004203388.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179757 NZ_CP063942:c3774193-3774091 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT179757 NZ_CP063942:3774087-3774234 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
