Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 415383..415528 | Replicon | chromosome |
| Accession | NZ_CP063936 | ||
| Organism | Klebsiella pneumoniae strain BS317-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 415390..415492 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 415383..415528 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA63_RS02110 | 410915..412348 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA63_RS02115 | 412464..412703 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA63_RS02120 | 412801..412992 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA63_RS02125 | 412989..413642 | - | 654 | WP_031589291.1 | protein-serine/threonine phosphatase | - |
| ISA63_RS02130 | 413799..414767 | + | 969 | WP_162472361.1 | VirK/YbjX family protein | - |
| ISA63_RS02135 | 414872..415015 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 415383..415528 | + | 146 | - | - | Antitoxin |
| - | 415390..415492 | - | 103 | - | - | Toxin |
| ISA63_RS02140 | 415651..415989 | - | 339 | WP_002911404.1 | YebY family protein | - |
| ISA63_RS02145 | 416006..416875 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ISA63_RS02150 | 416879..417253 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISA63_RS02155 | 417366..417596 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA63_RS02160 | 417675..418334 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISA63_RS02165 | 418338..420398 | - | 2061 | WP_032444542.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179717 NZ_CP063936:c415492-415390 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179717 NZ_CP063936:415383-415528 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
