Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1307272..1307416 | Replicon | chromosome |
| Accession | NZ_CP063933 | ||
| Organism | Klebsiella variicola strain BS369-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1307278..1307380 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1307272..1307416 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA65_RS06435 | 1302794..1304227 | + | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA65_RS06440 | 1304343..1304582 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA65_RS06445 | 1304680..1304871 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA65_RS06450 | 1304868..1305521 | - | 654 | WP_012967753.1 | protein-serine/threonine phosphatase | - |
| ISA65_RS06455 | 1305678..1306646 | + | 969 | WP_194387062.1 | VirK/YbjX family protein | - |
| ISA65_RS06460 | 1306750..1306893 | + | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| - | 1307272..1307416 | + | 145 | - | - | Antitoxin |
| - | 1307278..1307380 | - | 103 | - | - | Toxin |
| ISA65_RS06465 | 1307538..1307876 | - | 339 | WP_008804271.1 | YebY family protein | - |
| ISA65_RS06470 | 1307893..1308762 | - | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA65_RS06475 | 1308766..1309140 | - | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| ISA65_RS06480 | 1309254..1309484 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA65_RS06485 | 1309563..1310222 | + | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| ISA65_RS06490 | 1310226..1312286 | - | 2061 | WP_032746815.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179679 NZ_CP063933:c1307380-1307278 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179679 NZ_CP063933:1307272-1307416 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
