Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3468817..3468961 | Replicon | chromosome |
| Accession | NZ_CP063932 | ||
| Organism | Klebsiella variicola strain BS375-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3468823..3468925 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3468817..3468961 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA66_RS16670 | 3464339..3465772 | + | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA66_RS16675 | 3465888..3466127 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA66_RS16680 | 3466225..3466416 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA66_RS16685 | 3466413..3467066 | - | 654 | WP_012967753.1 | protein-serine/threonine phosphatase | - |
| ISA66_RS16690 | 3467223..3468191 | + | 969 | WP_194387062.1 | VirK/YbjX family protein | - |
| ISA66_RS16695 | 3468295..3468438 | + | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| - | 3468817..3468961 | + | 145 | - | - | Antitoxin |
| - | 3468823..3468925 | - | 103 | - | - | Toxin |
| ISA66_RS16700 | 3469083..3469421 | - | 339 | WP_008804271.1 | YebY family protein | - |
| ISA66_RS16705 | 3469438..3470307 | - | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA66_RS16710 | 3470311..3470685 | - | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| ISA66_RS16715 | 3470799..3471029 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA66_RS16720 | 3471108..3471767 | + | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| ISA66_RS16725 | 3471771..3473831 | - | 2061 | WP_032746815.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179665 NZ_CP063932:c3468925-3468823 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179665 NZ_CP063932:3468817-3468961 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
