Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5164458..5164603 | Replicon | chromosome |
| Accession | NZ_CP063927 | ||
| Organism | Klebsiella pneumoniae strain S183-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5164494..5164596 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5164458..5164603 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA68_RS24900 | 5159588..5161648 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| ISA68_RS24905 | 5161652..5162311 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISA68_RS24910 | 5162390..5162620 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA68_RS24915 | 5162733..5163107 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISA68_RS24920 | 5163111..5163980 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ISA68_RS24925 | 5163997..5164335 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 5164458..5164603 | - | 146 | - | - | Antitoxin |
| - | 5164494..5164596 | + | 103 | - | - | Toxin |
| ISA68_RS24930 | 5164971..5165114 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| ISA68_RS24935 | 5165219..5166187 | - | 969 | WP_074426446.1 | VirK/YbjX family protein | - |
| ISA68_RS24940 | 5166344..5166997 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| ISA68_RS24945 | 5166994..5167185 | - | 192 | WP_002911395.1 | YebW family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179608 NZ_CP063927:5164494-5164596 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179608 NZ_CP063927:c5164603-5164458 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
