Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 272006..272150 | Replicon | chromosome |
| Accession | NZ_CP063926 | ||
| Organism | Klebsiella variicola strain S187-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 272042..272144 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 272006..272150 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA69_RS01250 | 267136..269196 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| ISA69_RS01255 | 269200..269859 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| ISA69_RS01260 | 269938..270168 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA69_RS01265 | 270282..270656 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| ISA69_RS01270 | 270660..271529 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA69_RS01275 | 271546..271884 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 272006..272150 | - | 145 | - | - | Antitoxin |
| - | 272042..272144 | + | 103 | - | - | Toxin |
| ISA69_RS01280 | 272529..272672 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| ISA69_RS01285 | 272776..273744 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| ISA69_RS01290 | 273900..274553 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| ISA69_RS01295 | 274550..274741 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISA69_RS01300 | 274839..275078 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISA69_RS01305 | 275194..276627 | - | 1434 | WP_048268569.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179582 NZ_CP063926:272042-272144 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179582 NZ_CP063926:c272150-272006 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
