Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 343165..343310 | Replicon | chromosome |
| Accession | NZ_CP063925 | ||
| Organism | Klebsiella pneumoniae strain S210-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 343172..343274 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 343165..343310 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA70_RS01675 | 338697..340130 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA70_RS01680 | 340246..340485 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA70_RS01685 | 340583..340774 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA70_RS01690 | 340771..341424 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| ISA70_RS01695 | 341581..342549 | + | 969 | WP_074421963.1 | VirK/YbjX family protein | - |
| ISA70_RS01700 | 342654..342797 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 343165..343310 | + | 146 | - | - | Antitoxin |
| - | 343172..343274 | - | 103 | - | - | Toxin |
| ISA70_RS01705 | 343433..343771 | - | 339 | WP_002911404.1 | YebY family protein | - |
| ISA70_RS01710 | 343788..344657 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ISA70_RS01715 | 344661..345035 | - | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| ISA70_RS01720 | 345148..345378 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA70_RS01725 | 345457..346116 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISA70_RS01730 | 346120..348180 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179565 NZ_CP063925:c343274-343172 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179565 NZ_CP063925:343165-343310 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
