Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4602644..4602788 | Replicon | chromosome |
| Accession | NZ_CP063917 | ||
| Organism | Klebsiella variicola strain BM374-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4602650..4602752 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4602644..4602788 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA75_RS22230 | 4598166..4599599 | + | 1434 | WP_012541265.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA75_RS22235 | 4599715..4599954 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA75_RS22240 | 4600052..4600243 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA75_RS22245 | 4600240..4600893 | - | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| ISA75_RS22250 | 4601050..4602018 | + | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| ISA75_RS22255 | 4602122..4602265 | + | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| - | 4602644..4602788 | + | 145 | - | - | Antitoxin |
| - | 4602650..4602752 | - | 103 | - | - | Toxin |
| ISA75_RS22260 | 4602910..4603248 | - | 339 | WP_008804271.1 | YebY family protein | - |
| ISA75_RS22265 | 4603265..4604134 | - | 870 | WP_194400456.1 | copper homeostasis membrane protein CopD | - |
| ISA75_RS22270 | 4604138..4604512 | - | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| ISA75_RS22275 | 4604626..4604856 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA75_RS22280 | 4604935..4605594 | + | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| ISA75_RS22285 | 4605598..4607658 | - | 2061 | WP_012541258.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179491 NZ_CP063917:c4602752-4602650 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179491 NZ_CP063917:4602644-4602788 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
