Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4487270..4487414 | Replicon | chromosome |
| Accession | NZ_CP063916 | ||
| Organism | Klebsiella variicola strain BS327-2-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4487276..4487378 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4487270..4487414 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA76_RS21735 | 4482792..4484225 | + | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA76_RS21740 | 4484341..4484580 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA76_RS21745 | 4484678..4484869 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA76_RS21750 | 4484866..4485519 | - | 654 | WP_012967753.1 | protein-serine/threonine phosphatase | - |
| ISA76_RS21755 | 4485676..4486644 | + | 969 | WP_194387062.1 | VirK/YbjX family protein | - |
| ISA76_RS21760 | 4486748..4486891 | + | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| - | 4487270..4487414 | + | 145 | - | - | Antitoxin |
| - | 4487276..4487378 | - | 103 | - | - | Toxin |
| ISA76_RS21765 | 4487536..4487874 | - | 339 | WP_008804271.1 | YebY family protein | - |
| ISA76_RS21770 | 4487891..4488760 | - | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA76_RS21775 | 4488764..4489138 | - | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| ISA76_RS21780 | 4489252..4489482 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA76_RS21785 | 4489561..4490220 | + | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| ISA76_RS21790 | 4490224..4492284 | - | 2061 | WP_032746815.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179475 NZ_CP063916:c4487378-4487276 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179475 NZ_CP063916:4487270-4487414 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
