Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4102834..4102979 | Replicon | chromosome |
| Accession | NZ_CP063913 | ||
| Organism | Klebsiella pneumoniae strain BM336-2-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4102870..4102972 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4102834..4102979 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA78_RS19560 | 4097964..4100024 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| ISA78_RS19565 | 4100028..4100687 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISA78_RS19570 | 4100766..4100996 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA78_RS19575 | 4101109..4101483 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISA78_RS19580 | 4101487..4102356 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| ISA78_RS19585 | 4102373..4102711 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4102834..4102979 | - | 146 | - | - | Antitoxin |
| - | 4102870..4102972 | + | 103 | - | - | Toxin |
| ISA78_RS19590 | 4103347..4103490 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| ISA78_RS19595 | 4103595..4104563 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| ISA78_RS19600 | 4104720..4105373 | + | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| ISA78_RS19605 | 4105370..4105561 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISA78_RS19610 | 4105659..4105898 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISA78_RS19615 | 4106014..4107447 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179439 NZ_CP063913:4102870-4102972 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179439 NZ_CP063913:c4102979-4102834 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
