Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 801655..801799 | Replicon | chromosome |
| Accession | NZ_CP063911 | ||
| Organism | Klebsiella variicola strain M186-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 801661..801763 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 801655..801799 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA80_RS03940 | 797178..798611 | + | 1434 | WP_048268569.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA80_RS03945 | 798727..798966 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA80_RS03950 | 799064..799255 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA80_RS03955 | 799252..799905 | - | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| ISA80_RS03960 | 800061..801029 | + | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| ISA80_RS03965 | 801133..801276 | + | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| - | 801655..801799 | + | 145 | - | - | Antitoxin |
| - | 801661..801763 | - | 103 | - | - | Toxin |
| ISA80_RS03970 | 801921..802259 | - | 339 | WP_008804271.1 | YebY family protein | - |
| ISA80_RS03975 | 802276..803145 | - | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA80_RS03980 | 803149..803523 | - | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| ISA80_RS03985 | 803637..803867 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA80_RS03990 | 803946..804605 | + | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| ISA80_RS03995 | 804609..806669 | - | 2061 | WP_012541258.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179396 NZ_CP063911:c801763-801661 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179396 NZ_CP063911:801655-801799 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
