Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 863491..863636 | Replicon | chromosome |
| Accession | NZ_CP063906 | ||
| Organism | Klebsiella pneumoniae strain BM327-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 863498..863600 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 863491..863636 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA83_RS04365 | 859023..860456 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA83_RS04370 | 860572..860811 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA83_RS04375 | 860909..861100 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA83_RS04380 | 861097..861750 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| ISA83_RS04385 | 861907..862875 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| ISA83_RS04390 | 862980..863123 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 863491..863636 | + | 146 | - | - | Antitoxin |
| - | 863498..863600 | - | 103 | - | - | Toxin |
| ISA83_RS04395 | 863759..864097 | - | 339 | WP_002911404.1 | YebY family protein | - |
| ISA83_RS04400 | 864114..864983 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ISA83_RS04405 | 864987..865361 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISA83_RS04410 | 865474..865704 | + | 231 | WP_025860700.1 | DNA polymerase III subunit theta | - |
| ISA83_RS04415 | 865783..866442 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISA83_RS04420 | 866446..868506 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179338 NZ_CP063906:c863600-863498 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179338 NZ_CP063906:863491-863636 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
