Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 667800..667945 | Replicon | chromosome |
| Accession | NZ_CP063904 | ||
| Organism | Klebsiella pneumoniae strain BM334-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 667836..667938 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 667800..667945 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA84_RS03200 | 662930..664990 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| ISA84_RS03205 | 664994..665653 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISA84_RS03210 | 665732..665962 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA84_RS03215 | 666075..666449 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISA84_RS03220 | 666453..667322 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ISA84_RS03225 | 667339..667677 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 667800..667945 | - | 146 | - | - | Antitoxin |
| - | 667836..667938 | + | 103 | - | - | Toxin |
| ISA84_RS03230 | 668312..668455 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| ISA84_RS03235 | 668560..669528 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| ISA84_RS03240 | 669685..670338 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| ISA84_RS03245 | 670335..670526 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISA84_RS03250 | 670624..670863 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISA84_RS03255 | 670979..672412 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179318 NZ_CP063904:667836-667938 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179318 NZ_CP063904:c667945-667800 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
