Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4738656..4738803 | Replicon | chromosome |
| Accession | NZ_CP063902 | ||
| Organism | Klebsiella quasipneumoniae strain BS419-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4738697..4738799 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4738656..4738803 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA85_RS22910 | 4733791..4735851 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| ISA85_RS22915 | 4735855..4736514 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| ISA85_RS22920 | 4736593..4736823 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA85_RS22925 | 4736936..4737310 | + | 375 | WP_064794753.1 | CopC domain-containing protein YobA | - |
| ISA85_RS22930 | 4737314..4738183 | + | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| ISA85_RS22935 | 4738200..4738538 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4738656..4738803 | - | 148 | - | - | Antitoxin |
| - | 4738697..4738799 | + | 103 | - | - | Toxin |
| ISA85_RS22940 | 4739187..4739330 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| ISA85_RS22945 | 4739434..4740402 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| ISA85_RS22950 | 4740559..4741212 | + | 654 | WP_053810193.1 | protein-serine/threonine phosphatase | - |
| ISA85_RS22955 | 4741209..4741400 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISA85_RS22960 | 4741498..4741737 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISA85_RS22965 | 4741854..4743287 | - | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179308 NZ_CP063902:4738697-4738799 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT179308 NZ_CP063902:c4738803-4738656 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
