Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1292155..1292302 Replicon chromosome
Accession NZ_CP063900
Organism Klebsiella quasipneumoniae strain BS324-2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1292159..1292261 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1292155..1292302 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ISA86_RS06505 1287671..1289104 + 1434 WP_032456308.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
ISA86_RS06510 1289221..1289460 + 240 WP_002911393.1 YebV family protein -
ISA86_RS06515 1289558..1289749 + 192 WP_002911395.1 YebW family protein -
ISA86_RS06520 1289746..1290399 - 654 WP_099441356.1 protein-serine/threonine phosphatase -
ISA86_RS06525 1290556..1291524 + 969 WP_004203383.1 VirK/YbjX family protein -
ISA86_RS06530 1291628..1291771 + 144 WP_032425946.1 Ecr family regulatory small membrane protein -
- 1292155..1292302 + 148 - - Antitoxin
- 1292159..1292261 - 103 - - Toxin
ISA86_RS06535 1292420..1292758 - 339 WP_002911404.1 YebY family protein -
ISA86_RS06540 1292775..1293644 - 870 WP_064183814.1 copper homeostasis membrane protein CopD -
ISA86_RS06545 1293648..1294022 - 375 WP_194417786.1 CopC domain-containing protein YobA -
ISA86_RS06550 1294135..1294365 + 231 WP_002911406.1 DNA polymerase III subunit theta -
ISA86_RS06555 1294444..1295103 + 660 WP_004203387.1 exodeoxyribonuclease X -
ISA86_RS06560 1295107..1297167 - 2061 WP_004203388.1 oligopeptidase B -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T179287 NZ_CP063900:c1292261-1292159 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 148 bp

>AT179287 NZ_CP063900:1292155-1292302 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References