Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3863774..3863918 | Replicon | chromosome |
| Accession | NZ_CP063898 | ||
| Organism | Klebsiella variicola strain BS326-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3863780..3863882 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3863774..3863918 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA87_RS18555 | 3859296..3860729 | + | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA87_RS18560 | 3860845..3861084 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA87_RS18565 | 3861182..3861373 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA87_RS18570 | 3861370..3862023 | - | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| ISA87_RS18575 | 3862180..3863148 | + | 969 | WP_194388667.1 | VirK/YbjX family protein | - |
| ISA87_RS18580 | 3863252..3863395 | + | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| - | 3863774..3863918 | + | 145 | - | - | Antitoxin |
| - | 3863780..3863882 | - | 103 | - | - | Toxin |
| ISA87_RS18585 | 3864040..3864378 | - | 339 | WP_008804271.1 | YebY family protein | - |
| ISA87_RS18590 | 3864395..3865264 | - | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA87_RS18595 | 3865268..3865642 | - | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| ISA87_RS18600 | 3865756..3865986 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA87_RS18605 | 3866065..3866724 | + | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| ISA87_RS18610 | 3866728..3868788 | - | 2061 | WP_070612270.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179272 NZ_CP063898:c3863882-3863780 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179272 NZ_CP063898:3863774-3863918 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
