Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4350909..4351056 | Replicon | chromosome |
| Accession | NZ_CP063896 | ||
| Organism | Klebsiella quasipneumoniae strain BS419-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4350950..4351052 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4350909..4351056 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA88_RS21025 | 4346044..4348104 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| ISA88_RS21030 | 4348108..4348767 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| ISA88_RS21035 | 4348846..4349076 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA88_RS21040 | 4349189..4349563 | + | 375 | WP_064794753.1 | CopC domain-containing protein YobA | - |
| ISA88_RS21045 | 4349567..4350436 | + | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| ISA88_RS21050 | 4350453..4350791 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4350909..4351056 | - | 148 | - | - | Antitoxin |
| - | 4350950..4351052 | + | 103 | - | - | Toxin |
| ISA88_RS21055 | 4351440..4351583 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| ISA88_RS21060 | 4351687..4352655 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| ISA88_RS21065 | 4352812..4353465 | + | 654 | WP_053810193.1 | protein-serine/threonine phosphatase | - |
| ISA88_RS21070 | 4353462..4353653 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISA88_RS21075 | 4353751..4353990 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISA88_RS21080 | 4354107..4355540 | - | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179257 NZ_CP063896:4350950-4351052 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT179257 NZ_CP063896:c4351056-4350909 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
