Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 507131..507276 | Replicon | chromosome |
| Accession | NZ_CP063890 | ||
| Organism | Klebsiella pneumoniae strain BS433-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 507138..507240 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 507131..507276 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISB10_RS02520 | 502663..504096 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISB10_RS02525 | 504212..504451 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISB10_RS02530 | 504549..504740 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISB10_RS02535 | 504737..505390 | - | 654 | WP_194428964.1 | protein-serine/threonine phosphatase | - |
| ISB10_RS02540 | 505547..506515 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| ISB10_RS02545 | 506620..506763 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 507131..507276 | + | 146 | - | - | Antitoxin |
| - | 507138..507240 | - | 103 | - | - | Toxin |
| ISB10_RS02550 | 507399..507737 | - | 339 | WP_002911404.1 | YebY family protein | - |
| ISB10_RS02555 | 507754..508623 | - | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| ISB10_RS02560 | 508627..509001 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISB10_RS02565 | 509114..509344 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISB10_RS02570 | 509423..510082 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISB10_RS02575 | 510086..512146 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179235 NZ_CP063890:c507240-507138 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179235 NZ_CP063890:507131-507276 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
