Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4508602..4508746 | Replicon | chromosome |
| Accession | NZ_CP063889 | ||
| Organism | Klebsiella variicola strain BS325-3-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4508638..4508740 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4508602..4508746 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISB13_RS21615 | 4503732..4505792 | + | 2061 | WP_032746815.1 | oligopeptidase B | - |
| ISB13_RS21620 | 4505796..4506455 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| ISB13_RS21625 | 4506534..4506764 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISB13_RS21630 | 4506878..4507252 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| ISB13_RS21635 | 4507256..4508125 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISB13_RS21640 | 4508142..4508480 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 4508602..4508746 | - | 145 | - | - | Antitoxin |
| - | 4508638..4508740 | + | 103 | - | - | Toxin |
| ISB13_RS21645 | 4509125..4509268 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| ISB13_RS21650 | 4509372..4510340 | - | 969 | WP_194387062.1 | VirK/YbjX family protein | - |
| ISB13_RS21655 | 4510497..4511150 | + | 654 | WP_012967753.1 | protein-serine/threonine phosphatase | - |
| ISB13_RS21660 | 4511147..4511338 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISB13_RS21665 | 4511436..4511675 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISB13_RS21670 | 4511791..4513224 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179226 NZ_CP063889:4508638-4508740 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179226 NZ_CP063889:c4508746-4508602 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
