Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4344384..4344531 | Replicon | chromosome |
| Accession | NZ_CP063887 | ||
| Organism | Klebsiella quasipneumoniae strain BM419-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4344425..4344527 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4344384..4344531 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISB14_RS21000 | 4339519..4341579 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| ISB14_RS21005 | 4341583..4342242 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| ISB14_RS21010 | 4342321..4342551 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISB14_RS21015 | 4342664..4343038 | + | 375 | WP_064794753.1 | CopC domain-containing protein YobA | - |
| ISB14_RS21020 | 4343042..4343911 | + | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| ISB14_RS21025 | 4343928..4344266 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4344384..4344531 | - | 148 | - | - | Antitoxin |
| - | 4344425..4344527 | + | 103 | - | - | Toxin |
| ISB14_RS21030 | 4344915..4345058 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| ISB14_RS21035 | 4345162..4346130 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| ISB14_RS21040 | 4346287..4346940 | + | 654 | WP_053810193.1 | protein-serine/threonine phosphatase | - |
| ISB14_RS21045 | 4346937..4347128 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISB14_RS21050 | 4347226..4347465 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISB14_RS21055 | 4347582..4349015 | - | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179208 NZ_CP063887:4344425-4344527 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT179208 NZ_CP063887:c4344531-4344384 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
