Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5233588..5233733 | Replicon | chromosome |
| Accession | NZ_CP063885 | ||
| Organism | Klebsiella pneumoniae strain BS361-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5233595..5233697 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5233588..5233733 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISB15_RS25385 | 5229120..5230553 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISB15_RS25390 | 5230669..5230908 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISB15_RS25395 | 5231006..5231197 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISB15_RS25400 | 5231194..5231847 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| ISB15_RS25405 | 5232004..5232972 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| ISB15_RS25410 | 5233077..5233220 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5233588..5233733 | + | 146 | - | - | Antitoxin |
| - | 5233595..5233697 | - | 103 | - | - | Toxin |
| ISB15_RS25415 | 5233856..5234194 | - | 339 | WP_002911404.1 | YebY family protein | - |
| ISB15_RS25420 | 5234211..5235080 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ISB15_RS25425 | 5235084..5235458 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ISB15_RS25430 | 5235571..5235801 | + | 231 | WP_025860700.1 | DNA polymerase III subunit theta | - |
| ISB15_RS25435 | 5235880..5236539 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ISB15_RS25440 | 5236543..5238603 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179195 NZ_CP063885:c5233697-5233595 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179195 NZ_CP063885:5233588-5233733 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
