Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4412051..4412196 | Replicon | chromosome |
| Accession | NZ_CP063881 | ||
| Organism | Klebsiella pneumoniae strain S90-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4412087..4412189 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4412051..4412196 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOD49_RS21510 | 4407181..4409241 | + | 2061 | WP_047694778.1 | oligopeptidase B | - |
| IOD49_RS21515 | 4409245..4409904 | - | 660 | WP_102000926.1 | exodeoxyribonuclease X | - |
| IOD49_RS21520 | 4409983..4410213 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IOD49_RS21525 | 4410326..4410700 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| IOD49_RS21530 | 4410704..4411573 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| IOD49_RS21535 | 4411590..4411928 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4412051..4412196 | - | 146 | - | - | Antitoxin |
| - | 4412087..4412189 | + | 103 | - | - | Toxin |
| IOD49_RS21540 | 4412564..4412707 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IOD49_RS21545 | 4412812..4413780 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IOD49_RS21550 | 4413937..4414590 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| IOD49_RS21555 | 4414587..4414778 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IOD49_RS21560 | 4414876..4415115 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IOD49_RS21565 | 4415231..4416664 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179171 NZ_CP063881:4412087-4412189 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179171 NZ_CP063881:c4412196-4412051 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
